Pediatric inflammatory bowel disease (IBD)Description The dataset consists of 951 tissue section scans taken from 167 H&E-stained whole slides from 18 pediatric inflammatory bowel disease (IBD) patients. Slide section scans are provided as-is without any initial image pre-processing, normalization, or cropping. Labels are provided at the patient, slide (anatomic site), and section (tissue slice) levels. Each slide is labelled with biopsy site and normal or abnormal classification per the surgical pathology report. Each tissue section scan from an abnormal slide is further classified as normal or abnormal by pathologist. Files may be viewed and annotated using standard, opensource slide-viewing software, such as Aperio ImageScope, OpenSlide, TiffSlide, and QuPath.
Technical details Scans of H&E-stained histology slides of biopsied tissue from endoscopy. Captured with MikroScan SL5 in SVS TIFF format with .tif file extension.
Martin-King, C., Nael, A., Ehwerhemuepha, L. et al. Histopathology imaging and clinical data including remission status in pediatric inflammatory bowel disease. Sci Data 11, 761 (2024). https://doi.org/10.1038/s41597-024-03592-7
2) Each image .tif file will be downloaded to a zip file. The .tif image files are named according to the metadata in the excel linked below. This way, once the images are extracted from the zip files, they can be linked to patient and scan attributes.
Martin-King, C., Nael, A., Ehwerhemuepha, L. et al. Histopathology imaging and clinical data including remission status in pediatric inflammatory bowel disease. Sci Data 11, 761 (2024). https://doi.org/10.1038/s41597-024-03592-7
